The solutions are grouped after the original system that they are based on, an overview is shown in the following table with links to more detailed output files:
Source system/model | Test problem | Error of source model | Error | Residual | Time (s) (1GHz) | Similarity with source model FP/FN/ME | Stability between runs | Output files | Reference to algorithm |
---|---|---|---|---|---|---|---|---|---|
simpleLin | simpleLin1 | 8 | 8 | 0 | 17 | 0/0/0 | 5/5 | Output files | 1 (footnote) |
simpleLin2 | 187.4 | 140.2 | 132.2 | 86 | 0/0/- | 5/5 | Output files | 1 | |
simpleFb | simpleFb1 | 7 | 7 | 0 | 14 | 0/0/0 | 5/5 | Output files | 1 |
simpleFb2 | 45.46 | 42.14 | 34.14 | 36 | 1/1/- | 3/5 | Output files | 1 | |
simpleFb3 | 7 | 7 | 0 | 41 | 0/0/0 | 3/5 | Output files | 1 | |
simpleFb4 | 18.39 | 7.071 | 0.0713 | 47 | 0/0/- | 2/5 | Output files | 1 | |
osc | osc1 | 6 | 6.149 | 0.1491 | 18 | 0/0/0 | 5/5 | Output files | 1 |
osc2 | 122.1 | 87.34 | 57.34 | 24 | 0/0 | 4/5 | Output files | 1 | |
metabol | metabol1 | 30 | 30 | 0 | 5400 | 0/0/0 | 3/3 | Output files | 1 |
metabol2 | 1214 | 751.6 | 601.6 | 11000 | 0/0/- | 2/3 | Output files | 1 | |
metabol3 | 1442 | 861.1 | 696.1 | 13000 | 2/1/- | 1/5* | Output files | 1 | |
3genes | 3genes1 | 39 | 39 | 0 | 35000 | 0/0/0 | 3/3 | Output files | 1 |
feedf | feedf1 | 1.760 | 1.640 | 78 | 5/5 | Output files | 3 | ||
feedf2 | 1958 | 1858 | 100 | 5/5 | Output files | 3 | |||
inhosc | inhosc1 | 9.863 | 9.813 | 12 | 5/5 | Output files | 3 | ||
inhosc2 | 814.4 | 789.4 | 18 | 2/5 | Output files | 3 | |||
bifeedb | bifeedb1 | 8.444 | 8.284 | 160 | 5/5 | Output files | 3 | ||
bifeedb2 | 2933 | 2793 | 200 | 5/5 | Output files | 3 |
Source system/model | Test problem | Error of source model | Error | Residual | Time (s) (1GHz) | Similarity with source model FP/FN/ME | Stability between runs | Output files | Reference to algorithm |
---|---|---|---|---|---|---|---|---|---|
ss_cascade | ss_cascade1 | 14 | 14 | 0 | 180 | 0/0/0 | 5/5 | Output files | 1 |
ss_cascade2 | 14 | 14 | 0 | 130 | 0/0/0 | 5/5 | Output files | 1 | |
ss_cascade3 | 498.9 | 476.7 | 462.7 | 860 | 1/1/- | 1/5* | Output files | 1 | |
ss_branch | ss_branch1 | 17 | 17 | 0 | 68 | 0/0/0 | 5/5 | Output files | 1 |
ss_branch2 | 17 | 17 | 0 | 110 | 0/0/0 | 5/5 | Output files | 1 | |
ss_branch3 | 17 | 17 | 0 | 150 | 0/0/0 | 5/5 | Output files | 1 | |
ss_branch4 | 17 | 17 | 0 | 71 | 0/0/0 | 5/5 | Output files | 1 | |
ss_branch5 | 211.3 | 142.1 | 122.1 | 300 | 4/1/- | 3/5 | Output files | 1 | |
ss_branch6 | 18 | 18 | 0 | 90 | 0/0/0 | 5/5 | Output files | 1 | |
ss_5genes | ss_5genes1 | 23 | 23 | 0 | 600 | 0/0/0 | 5/5 | Output files | 1 |
ss_5genes2 | 300.3 | 211.0 | 183.0 | 2100 | 5/0/- | 2/5* | Output files | 1 | |
ss_5genes3 | 23 | 23 | 0 | 380 | 0/0/0 | 5/5 | Output files | 1 | |
ss_5genes4 | 23 | 23 | 0 | 640 | 0/0/0 | 5/5 | Output files | 1 | |
ss_5genes5 | 23 | 23.00 | 1.14E-3 | 400 | 0/0/0.02 | 5/5 | Output files | 1 | |
ss_5genes6 | 23 | 23 | 0 | 130 | 0/0/0 | 5/5 | Output files | 1 | |
ss_5genes7 | 23 | 23 | 0 | 190 | 0/0/0 | 5/5 | Output files | 1 | |
ss_5genes8 | 28 | 28 | 0 | 440 | 0/0/0 | 5/5 | Output files | 1 | |
ss_15genes | ss_15genes1 | 62 | 62 | 0 | 1500 | 0/0/0 | 5/5 | Output files | 1 |
ss_15genes2 | 2010 | 1783 | 1478 | 18000 | 3/4/- | 2/5* | Output files | 1 | |
ss_30genes | ss_30genes1 | 128 | 128 | 0 | 7900 | 0/0/0 | 5/5 | Output files | 1 |
ss_30genes2 | 4098 | 3628 | 2993 | 94000 | 6/7/- | 1/3* | Output files | 1 | |
ss_30genes3 | 128 | 128 | 0 | 18000 | 0/0/0 | 3/3 | Output files | 1 | |
ss_feedf | ss_feedf1 | 0.1969 | 0.0469 | 940 | 4/5 | Output files | 3 | ||
ss_feedf2 | 1952 | 1792 | 1500 | 5/5 | Output files | 3 | |||
ss_inhosc | ss_inhosc1 | 0.1967 | 0.1367 | 30 | 1/5 | Output files | 3 | ||
ss_inhosc2 | 371.2 | 341.2 | 50 | 1/5 | Output files | 3 | |||
ss_bifeedb | ss_bifeedb1 | 1.097 | 0.857 | 1600 | 3/5 | Output files | 3 | ||
ss_bifeedb2 | 2491 | 2311 | 1200 | 5/5 | Output files | 3 |
Source system/model | Test problem | Error of source model | Error | Residual | Time (s) (1GHz) | Similarity with source model FP/FN/ME | Stability between runs | Output files | Reference to algorithm |
---|---|---|---|---|---|---|---|---|---|
gma_feedf | gma_feedf1 | 0.1777 | 0.0177 | 11000 | 5/5 | Output files | 3 | ||
gma_feedf2 | 1917 | 1747 | 17000 | 5/5 | Output files | 3 | |||
gma_inhosc | gma_inhosc1 | 0.2059 | 0.1459 | 140 | 1/5 | Output files | 3 | ||
gma_inhosc2 | 371.4 | 341.4 | 700 | 1/5 | Output files | 3 | |||
gma_bifeedb | gma_bifeedb1 | 0.2546 | 0.0046 | 30000 | 5/5 | Output files | 3 | ||
gma_bifeedb2 | 2480 | 2290 | 18000 | 2/5 | Output files | 3 |
Source system/model | Test problem | Error of source model | Error | Residual | Time (s) (1GHz) | Similarity with source model FP/FN/ME | Stability between runs | Output files | Reference to algorithm |
---|---|---|---|---|---|---|---|---|---|
cytokine | cytokine1 | 25.92 | 17.92 | 11 | 1/5 | Output files | 1 | ||
cytokine2 | 42.17 | 32.17 | 23 | 1/5 | Output files | 1 | |||
ss_ethanolferm | ss_ethanolferm1 | 127.4 | 110.4 | 190 | 1/5 | Output files | 1 | ||
ss_ethanolferm2 | 1308 | 1292 | 360 | 1/5 | Output files | 1 | |||
ss_sosrepair | ss_sosrepair1 | 2642 | 2611 | 510 | 1/5 | Output files | 1 | ||
ss_sosrepair2 | 2823 | 2789 | 470 | 1/5 | Output files | 1 | |||
ss_cadBA | ss_cadBA1 | 750.6 | 726.6 | 250 | 1/5 | Output files | 1 | ||
ss_cadBA2 | 709.1 | 687.1 | 260 | 1/5 | Output files | 1 | |||
ss_clock | ss_clock1 | 928.4 | 803.4 | 360 | 1/5 | Output files | 1 | ||
ss_clock2 | 814.5 | 649.5 | 440 | 1/5 | Output files | 1 |
#var = number of dependent variables, #exp = number of experimental conditions with different initial conditions and/or input functions, #pts = number of data-points per time-series. Noise is added from a Gaussian distribution with standard deviation given as a certain percentage (denoted Noise) of each experimental value. Problem names starting with ss_ correspond to S-systems.
1) Gennemark and Wedelin, IET Systems biology (2007).
2) Gennemark and Wedelin, LNCS 5688, 205-217 (2009).
3) Dieck Kattas, Gennemark and Wedelin, CMSB (2010).