Publications

Google Scholar
List of publications from the DBLP Bibliography Server
List of publications from PubMed

2013

• Koppisetty, C.A.K., Frank, M., Kemp, G.J.L. and Nyholm, P.-G. (2013) Computation of binding energies including their enthalpy and entropy components for protein-ligand complexes using support vector machines. J. Chem. Inf. Model., 53, 2559-2570.
  doi:10.1021/ci400321r

2011

• Olsson, C.E. and Kemp, G.J.L. (2011) Standardizing Radiation Oncology Data for Future Modelling of Side Effects after Radiation Therapy. In Proceedings of the first international workshop on Managing interoperability and complexity in health systems, ACM, pp 67-70. (Challenges and Visions Award, first place)
  doi:10.1145/2064747.2064762
  

  

2010

• Lambrix, P. and Kemp, G. (eds.) (2010) Data Integration in the Life Sciences 7th International Conference, DILS 2010, Gothenburg, Sweden, August 25-27, 2010. Proceedings. Lecture Notes in Computer Science (vol. 6254), Springer, Berlin.
  doi:10.1007/978-3-642-15120-0
  

  

• Mehio, W., Kemp, G.J.L., Taylor P. and Walkinshaw, M.D. (2010) Identification of protein binding surfaces using surface triplet propensities. Bioinformatics, 26, 2549-2555.
  doi:10.1093/bioinformatics/btq490, PubMed
• Yeturu, K., Utriainen, T., Kemp, G.J.L. and Chandra, N. (2010) An automated framework for understanding structural variations in the binding grooves of MHC class II molecules. BMC Bioinformatics, 11(Suppl 1):S55.
  doi:10.1186/1471-2105-11-S1-S55, PubMed

2009

• Selpi, Bryant, C.H., Kemp, G.J.L., Sarv, J., Kristiansson, E. and Sunnerhagen, P. (2009) Predicting functional upstream open reading frames in Saccharomyces cerevisiae. BMC Bioinformatics, 10:451.
  doi:10.1186/1471-2105-10-451, PubMed
• Karjalainen, M. and Kemp, G.J.L. (2009) Uniform Query Processing in a Federation of RDFS and Relational Resources. In Desai, B.C. (ed.) International Database Engineering and Applications Symposium (IDEAS'09), Proceedings, ACM 978-1-60558-402-7, pp 315-320.
  doi:10.1145/1620432.1620469

2008

• Chalmers, S., Nilsson, J., Edler, H. and Kemp, G.J.L. (2008) An Ontology-Based Approach to Car Simulation and Design. In Third Asian Semantic Web Conference, ASWC2008 Bangkok, Thailand December 2008, Workshops Proceedings, pp 270-275.
  Proceedings
• Martins, J., Nunes, R., Karjalainen, M. and Kemp, G.J.L. (2008) A Functional Data Model Approach to Querying RDF/RDFS Data. In Gray, A., Jeffery, K. and Shao, J. (eds.) Sharing Data, Information and Knowledge: 25th British National Conference on Databases, BNCOD 25, Lecture Notes in Computer Science (vol. 5071), Springer, Berlin, pp 153-164.
  doi:10.1007/978-3-540-70504-8_14
• Selpi, Bryant, C.H. and Kemp, G.J.L. (2008) Using mRNA Secondary Structure Predictions Improves Recognition of Known Yeast Functional uORFs. In Wehenkel, L., d'Alché-Buc, F., Moreau, Y. and Geurts, P. (eds.) MLSB08, The Second International Workshop on Machine Learning in Systems Biology, pp 85-93.
  Proceedings

2007

• Cvijovic, M., Dalevi, D., Bilsland, E., Kemp, G.J.L. and Sunnerhagen, P. (2007) Identification of putative regulatory upstream ORFs in the yeast genome using heuristics and evolutionary conservation. BMC Bioinformatics, 8:295.
  doi:10.1186/1471-2105-8-295, PubMed
• Fernandez-Ricaud, L., Warringer, J., Ericson, E., Glaab, K., Davidsson, P., Nilsson, F., Kemp, G.J.L., Nerman, O. and Blomberg, A. (2007) PROPHECY - a yeast phenome database, update 2006. Nucleic Acids Research, 35, Database issue D463-D467.
  doi:10.1093/nar/gkl1029, PubMed
• Utriainen, T. and Kemp, G.J.L. (2007) Using long fragments to reconstruct RNA backbones. In Yang, J.Y., Yang, M.Q., Zhu, M.M., Zhang, Y., Arabnia, H.R., Deng, Y. and Bourbakis, N. (eds.), Proceedings of the 7th IEEE International Conference on Bioinformatics and Bioengineering, IEEE Computer Society Press, pp 1424-1428.
  doi:10.1109/BIBE.2007.4375760

2006

• Gray, P.M.D. and Kemp, G.J.L. (2006) Capturing Quantified Constraints in FOL, Through Interaction with a Relationship Graph. In Staab, S. and Svátek, V. (eds.) Managing Knowledge in a World of Networks: 15th International Conference, EKAW 2006, Lecture Notes in Computer Science (vol. 4248), Springer-Verlag, Berlin, pp 19-26.
  doi:10.1007/11891451_4
• Selpi, Bryant, C.H., Kemp, G.J.L. and Cvijovic, M. (2006) A First Step towards Learning which uORFs Regulate Gene Expression. Journal of Integrative Bioinformatics, 3(2):31
  doi:10.2390/biecoll-jib-2006-31, http://journal.imbio.de/index.php?paper_id=31

2005

• Fernandez-Ricaud, L., Warringer, J., Ericson, E., Pylvänäinen, I., Kemp, G.J.L., Nerman, O. and Blomberg, A. (2005) PROPHECY - a database for high-resolution phenomics. Nucleic Acids Research, 33, Database issue D369-D373.
  doi:10.1093/nar/gki126, Journal web site, PubMed
• Kemp, G.J.L. (2005) Models of Database Interconnectivity. In Lesk, A.M. (ed.) Database Annotation in Molecular Biology: Principles and Practice, Wiley, pp 203-221.
  doi:10.1002/0470012420.ch12, Publisher's web site
  

  

• Nahmany, A., Strino, F., Rosen, J., Kemp, G.J.L. and Nyholm, P.-G. (2005) The use of a genetic algorithm search for molecular mechanics (MM3)-based conformational analysis of oligosaccharides, Carbohydrate Research, 340, 1059-1064.
  doi:10.1016/j.carres.2004.12.037, PubMed
• Strino, F., Nahmany, A., Rosen, J., Kemp, G.J.L., Sá-correia, I. and Nyholm, P.-G. (2005) Conformation of the exopolysaccharide of Burkholderia cepacia predicted with molecular mechanics (MM3) using genetic algorithm search, Carbohydrate Research, 340, 1019-1024.
  doi:10.1016/j.carres.2004.12.031, PubMed
• Swain, M.T., Brooks, A.J. and Kemp, G.J.L. (2005) Predicting peptide interactions with model class II MHC structures. International Journal on Artificial Intelligence Tools, 14, 561-575.
  doi:10.1142/S0218213005002260, Journal web site

2004

• Gray, P.M.D. and Kemp, G.J.L. (2004) An Expressive Functional Data Model and Query Language for Bioinformatics Data Integration. In Gray, P.M.D., Kerschberg, L., King, P.J.H. and Poulovassilis, A. (eds.) The Functional Approach to Data Management, Springer, pp 166-188.
  Publisher's web site
• Kemp, G.J.L., Gray, P.M.D. and Embury, S.M. (2004) Optimisation Strategies for Functional Queries in a Distributed Environment. In Gray, P.M.D., Kerschberg, L., King, P.J.H. and Poulovassilis, A. (eds.) The Functional Approach to Data Management, Springer, pp 189-210.
  Publisher's web site
  

  

• Kemp, G.J.L. and Selpi (2004) Pathway and Protein Interaction Data: from XML to FDM Database. In Rahm, E. (ed.) Data Integration in the Life Sciences, First International Workshop, DILS 2004, Lecture Notes in Computer Science (vol. 2994), Springer-Verlag, Berlin, pp 212-219.
  doi:10.1007/978-3-540-24745-6_15, Download PDF (122k) © Copyright Springer-Verlag, LNCS series
• Koussounadis, A.I., Ritchie, D.W., Kemp, G.J.L. and Secombes, C.J. (2004) Analysis of Fish IL-1b and Derived Peptide Sequences Indicates Conserved Structures with Species-Specific IL-1 Receptor Binding: Implications for Pharmacological Design. Current Pharmaceutical Design, 10, 3857-3871.
  Journal web site, PubMed

2003

• Kemp, G.J.L. and Gray, P.M.D. (2003) P/FDM Mediator for a Bioinformatics Database Federation. In Lacroix, Z. and Critchlow, T. (eds.) Bioinformatics: Managing Scientific Data, Morgan Kaufmann Publishers, pp 249-275.
  Publisher's web site
  

  

2002

• Kemp, G.J.L., Angelopoulos, N. and Gray, P.M.D. (2002) Architecture of a Mediator for a Bioinformatics Database Federation. IEEE Transactions on Information Technology in Biomedicine, 6, 116-122.
  doi:10.1109/TITB.2002.1006298, Journal web site, PubMed

2001

• Cupit, P.M., Lorenzen, N., Strachan, G., Kemp, G.J.L., Secombes, C.J. and Cunningham, C. (2001) Neutralisation and binding of VHS virus by monovalent antibody fragments. Virus Research, 81, 47-56.
  doi:10.1016/S0168-1702(01)00354-9, PubMed
• Hui, K.Y., Gray, P.M.D., Kemp, G.J.L. and Preece, A.D. (2001) Constraints as Mobile Specifications in E-Commerce Applications. 9th IFIP 2.6 Working Conference on Database Semantics (DS-9), Semantic Issues in e-Commerce Systems, pp 357-379.
  Download PDF (207k)
• Kemp, G.J.L., Gray, P.M.D. and Sjöstedt, A.R. (2001) Rewrite Rules for Quantified Subqueries in a Federated Database. In Kerschberg, L. and Kafatos, M. (eds.), Proceedings Thirteenth International Conference on Scientific and Statistical Database Management, IEEE Computer Society Press, pp 134-143.
  doi:10.1109/SSDM.2001.938546, Download PDF (271k) © Copyright IEEE
• Kemp, G.J.L., Gray, P.M.D. and Sjöstedt, A.R. (2001) Improving Federated Database Queries Using Declarative Rewrite Rules for Quantified Subqueries. J. Intelligent Information Systems, 17, 281-299.
  doi:10.1023/A:1012866016118
• Swain, M.T. and Kemp, G.J.L. (2001) A CLP approach to the protein side-chain placement problem. In Walsh, T. (ed.) Principles and Practice of Constraint Programming - CP2001, Lecture Notes in Computer Science (vol. 2239), Springer-Verlag, Berlin, pp 479-493.
  doi:10.1007/3-540-45578-7_33, Download PDF (195k) © Copyright Springer-Verlag,
• Swain, M.T., Brooks, A.J. and Kemp, G.J.L. (2001) An automated approach to modelling class II MHC alleles and predicting peptide binding. Proceedings of the Second IEEE International Symposium on Bio-Informatics and Biomedical Engineering, IEEE Computer Society Press, pp 81-88.
  doi:10.1109/BIBE.2001.974415, Download PDF (328k) © Copyright IEEE
• Swain, M.T. and Kemp, G.J.L. (2001) Modelling protein side-chain conformations using constraint logic programming. Computers and Chemistry, 26, 85-95.
  doi:10.1016/S0097-8485(01)00103-6, Download PDF (290k), PubMed

2000

• Gray, P.M.D. and Kemp, G.J.L. (2000) Federated Database Technology for Data Integration - Lessons from Bioinformatics. In Koslow, S.H. and Huerta, M.F. (eds.), Electronic Collaboration in Science, The Progress in Neuroinformatics Research Series, vol. 2, Lawrence Erlbaum Associates Inc., New Jersey, pp 45-72.
  Publisher's web site
  

  

• Gray, P.M.D., Kemp, G.J.L., Brunschwig, P. and Embury, S.M. (2000) Collection Views: Dynamically composed views which inherit behaviour. In Lings, B. and Jeffery, K. (eds.), Advances in Databases: Proceedings of the Seventeenth British National Conference on Databases (BNCOD 17), Lecture Notes in Computer Science (vol. 1832), Springer-Verlag, Berlin, pp 102-121.
  doi:10.1007/3-540-45033-5_8, Download PDF (266k) © Copyright Springer-Verlag
• Kemp, G.J.L., Angelopoulos, N. and Gray, P.M.D. (2000) A Schema-based Approach to Building a Bioinformatics Database Federation. Proceedings IEEE International Symposium on Bio-Informatics and Biomedical Engineering, IEEE Computer Society Press, pp 13-20.
  doi:10.1109/BIBE.2000.889584, Download PDF (160k) © Copyright IEEE
• Kemp, G.J.L., Robertson, C.J., Gray, P.M.D. and Angelopoulos, N. (2000) CORBA and XML: Design Choices for Database Federations. In Lings, B. and Jeffery, K. (eds.), Advances in Databases: Proceedings of the Seventeenth British National Conference on Databases (BNCOD 17), Lecture Notes in Computer Science (vol. 1832), Springer-Verlag, Berlin, pp 191-208.
  doi:10.1007/3-540-45033-5_14, Download PDF (224k) © Copyright Springer-Verlag
• Ritchie, D.W. and Kemp, G.J.L. (2000) Protein Docking Using Spherical Polar Fourier Correlations. Proteins: Structure, Function and Genetics, 39, 178-194.
  doi:10.1002/(SICI)1097-0134(20000501)39:2<178::AID-PROT8>3.0.CO;2-6, PubMed

1999

• Gil, I., Gray, P.M.D. and Kemp, G.J.L. (1999) A Visual Interface and Navigator for the P/FDM Object Database. In Paton, N.W. and Griffiths, T. (eds.), Proceedings of User Interfaces to Data Intensive Systems (UIDIS'99), IEEE Computer Society Press, pp 54-63.
  doi:10.1109/UIDIS.1999.791462, Download PDF (564k) © Copyright IEEE
• Gray, P.M.D., Embury, S.M., Hui, K.Y. and Kemp, G.J.L. (1999) The Evolving Role of Constraints in the Functional Data Model. J. Intelligent Information Systems, 12, 113-137.
  doi:10.1023/A:1008748808699
• Ritchie, D.W. and Kemp, G.J.L. (1999) Fast Computation, Rotation, and Comparison of Low Resolution Spherical Harmonic Molecular Surfaces. J. Comp. Chem., 20, 383-395.
  doi:10.1002/(SICI)1096-987X(199903)20:4<383::AID-JCC1>3.0.CO;2-M, Download PDF (269k),

1998

• Secombes, C., Zou, Z., Daniels, C., Cunningham, C., Koussounadis, A. and Kemp, G. (1998) Rainbow trout cytokine and cytokine receptor genes. Immunological Reviews, 166, 337-344.
  PubMed

1997

• Gray, P.M.D., Preece, A.D., Fiddian, N.J., Gray, W.A., Bench-Capon, T.J.M., Shave, M.J.R., Azarmi, N., Wiegand, M., Ashwell, M., Beer, M., Cui, Z., Diaz, B., Embury, S.M., Hui, K., Jones, D.M., Kemp, G.J.L., Lawson, E.W., Lunn, K., Marti, P., Shao, J. and Visser, P.R.S. (1997) KRAFT: Knowledge Fusion from Distributed Databases and Knowledge Bases. Eighth International Workshop on Database and Expert System Applications (DEXA-97), IEEE Press, pp 682-691.
  Download PDF (91k)
• Ritchie, D.W. and Kemp, G.J.L. (1997) Modeling Antibody Side Chain Conformations Using Heuristic Database Search. In Gaasterland, T., Karp, P., Karplus, K., Ouzounis, C., Sander, C. and Valencia, A. (eds.) Proceedings of the Fifth International Conference on Intelligent Systems for Molecular Biology, AAAI Press, pp 237-240.
  PubMed

1996

• Gray, P.M.D., Kemp, G.J.L., Rawlings, C.J., Brown, N.P., Sander, C. Thornton, J.M., Orengo, C.M. Wodak, S.J. and Richelle, J. (1996) Macromolecular structure information and databases. Trends in Biochemical Sciences, 21, 251-256.
  PubMed
• Kemp, G.J.L., Dupont, J. and Gray, P.M.D. (1996) Using the Functional Data Model to Integrate Distributed Biological Data Sources. In Svensson, P. and French, J.C. (eds.), Proceedings Eighth International Conference on Scientific and Statistical Database Management, IEEE Computer Society Press, pp 176-185.
  doi:10.1109/SSDM.1996.506060 , Download PDF (245k) © Copyright IEEE

1995

• Boyle, J., Fothergill, J.E., Gray, P.M.D. and Kemp, G.J.L. (1995) A Data Model for Visualising and Exploring Protein Structure Data. In Geisow, M. (ed.) Perspectives on Protein Engineering and Complementary Technologies, 1995, Mayflower Worldwide, pp 13-16.

1994

• Gray, P.M.D. and Kemp, G.J.L. (1994) Object-Oriented Systems and Data Independence. In Patel, D., Sun, Y. and Patel, S. (eds.), 1994 International Conference on Object Oriented Information Systems (OOIS'94), Springer-Verlag, pp 3-24.
• Kemp, G.J.L., Iriarte, J.J. and Gray, P.M.D. (1994) Efficient Access to FDM Objects Stored in a Relational Database. In Bowers, D.S. (ed.), Directions in Databases: Proceedings of the Twelfth British National Conference on Databases (BNCOD 12), Lecture Notes in Computer Science (vol. 826), Springer-Verlag, Berlin, pp 170-186.
  doi:10.1007/3-540-58235-5_42
• Kemp, G.J.L., Jiao, Z., Gray, P.M.D. and Fothergill, J.E. (1994) Combining Computation with Database Access in Biomolecular Computing. In Litwin, W. and Risch, T. (eds.), Applications of Databases: Proceedings of the First International Conference, ADB-94, Lecture Notes in Computer Science (vol. 819), Springer-Verlag, Berlin, pp 317-335.
  doi:10.1007/3-540-58183-9_57
• Tempest, P.R., White, P., Williamson, E.D., Titball, R.W., Kelly, D.C., Kemp, G.J.L., Gray, P.M.D., Forster, S.J., Carr, F.J., Harris, W.J. (1994) Efficient generation of a reshaped human mAb specific to the alpha toxin of Clostridium perfringens. Protein Engineering, 7, 1501-1507.
  doi:10.1093/protein/7.12.1501, PubMed

1993

• Carr, F.J., Tempest, P.R., Kemp, G.J.L. and Harris, W.J. (1993) Human antibodies for therapeutic application. Industrial Biotechnology International, 49-51.
• Kemp, G.J.L. and Gray, P.M.D. (1993) Efficient use of Relational Databases for Storing Selected Object Classes. In OBJECT-ORIENTED DATA MANAGEMENT: Tools for Creating New Generations of IT Applications, UNICOM Seminars Ltd., pp 117-135.

1992

• Carr, F.J., Tempest, P.R., Forster, S.J., Kemp, G.J.L. and Harris, W. J. (1992) Development of humanised antibodies for therapeutic applications. Pharmaceutical Manufacturing International, 81-83.
• Kemp, G.J.L. (1992) Daplex used with an OODBS for protein representation and modelling. Technical Report AUCS/TR9205, Department of Computing Science, University of Aberdeen.

1991

• Kemp, G.J.L. (1991) Protein modelling: a design application of an object-oriented database. In Gero, J.S. (ed.) Artificial intelligence in design '91, Butterworth-Heinmann Ltd., pp 387-406.
• Kemp, G.J.L. and Melvin, D.G. (1991) A graphical interface for an object-oriented database. In Brown, H. (ed.), Hypermedia/Hypertext and Object-oriented Databases, Chapman and Hall, pp 307-322.

1990

• Gray, P.M.D. and Kemp, G.J.L. (1990) An OODB with entity-based persistence: a protein modelling application. In Addis, T.R. and Muir, R.M. (eds.), Research and Development in Expert Systems VII, Cambridge University Press, pp 203-214.
  Publisher's web site
• Gray, P.M.D., Paton, N.W., Kemp, G.J.L. and Fothergill, J.E. (1990) An object-oriented database for protein structure analysis. Protein Engineering, 3, 235-243.
  doi:10.1093/protein/3.4.235, PubMed
• Kemp, G.J.L. and Gray, P.M.D. (1990) Finding hydrophobic microdomains using an object-oriented database. CABIOS, 6, 357-363.
  doi:10.1093/bioinformatics/6.4.357, PubMed

1989

• Fothergill, J.E., Kemp, G.J.L., Paton, N.W., Carter, P. and Gray, P.M.D. (1989) The Structures of Human C1r and C1s and their Relationship to Other Serine Proteases. Behring Inst. Mitt., 84, 72-79.
  PubMed