Time | Date | Teacher | Topics |
15:15 |
Monday 16 January |
GK |
Lecture:
Introduction; Pairwise sequence alignment |
13:15 |
Wednesday 18 January |
GK |
Lecture: Perl (1) |
15:15 |
Wednesday 18 January |
GK |
Practical 1: Pairwise sequence alignment |
13:15 |
Monday 23 January |
GK |
Practical 2: Perl (1) |
15:15 |
Monday 23 January |
GK |
Lecture: Perl (2) |
13:15 |
Wednesday 25 January |
GK |
Lecture: Perl (3) |
15:15 |
Wednesday 25 January |
EK |
Lecture:
Next generation DNA sequencing |
13:15 |
Monday 30 January |
GK |
Practical 3: Perl (2) |
15:15 |
Monday 30 January |
MAF |
Lecture: Markov chains
(local access only) |
13:15 |
Wednesday 1 February |
GK |
Lecture: Sequence alignment |
15:15 |
Wednesday 1 February |
EK |
Lecture:
Next generation sequencing applications |
13:15 |
Monday 6 February |
GK |
Practical 4: Perl (3) |
15:15 |
Monday 6 February |
TS |
Lecture: Molecular phylogeny |
13:15 |
Monday 13 February |
GK |
Practical (for students without timetable clash) |
13:15 |
Wednesday 15 February |
GK |
Lecture: More on Perl and sequence
alignment |
15:15 |
Wednesday 15 February |
MAF |
Lecture: Hidden Markov models (HMMs)
(local access only) |
13:15 |
Monday 20 February |
GK |
Practical 5: Perl (4) |
13:15 |
Wednesday 22 February |
EK |
Lecture: Metagenomics |
15:15 |
Wednesday 22 February |
MAF |
Lecture: Baum-Welch and Generalized
HMMs (GHMMs) (local access only) |
13:15 |
Monday 27 February |
GK |
Practical 6:
Pairwise alignment and Perl revision |
13:15 |
Wednesday 29 February |
MAF |
Lecture: Pair HMMs (PHMMs), GPHMMs and comparative genomics |
15:15 |
Wednesday 29 February |
FB/GK |
Lecture: HMMER and
applications;
course summary |