Bioinformatics (2011/2012)

Course Plan

TimeDateTeacherTopics
15:15 Monday 16 January GK Lecture: Introduction; Pairwise sequence alignment
13:15 Wednesday 18 January GK Lecture: Perl (1)
15:15 Wednesday 18 January GK Practical 1: Pairwise sequence alignment
13:15 Monday 23 January GK Practical 2: Perl (1)
15:15 Monday 23 January GK Lecture: Perl (2)
13:15 Wednesday 25 January GK Lecture: Perl (3)
15:15 Wednesday 25 January EK Lecture: Next generation DNA sequencing
13:15 Monday 30 January GK Practical 3: Perl (2)
15:15 Monday 30 January MAF Lecture: Markov chains (local access only)
13:15 Wednesday 1 February GK Lecture: Sequence alignment
15:15 Wednesday 1 February EK Lecture: Next generation sequencing applications
13:15 Monday 6 February GK Practical 4: Perl (3)
15:15 Monday 6 February TS Lecture: Molecular phylogeny
13:15 Monday 13 February GK Practical (for students without timetable clash)
13:15 Wednesday 15 February GK Lecture: More on Perl and sequence alignment
15:15 Wednesday 15 February MAF Lecture: Hidden Markov models (HMMs) (local access only)
13:15 Monday 20 February GK Practical 5: Perl (4)
13:15 Wednesday 22 February EK Lecture: Metagenomics
15:15 Wednesday 22 February MAF Lecture: Baum-Welch and Generalized HMMs (GHMMs) (local access only)
13:15 Monday 27 February GK Practical 6: Pairwise alignment and Perl revision
13:15 Wednesday 29 February MAF Lecture: Pair HMMs (PHMMs), GPHMMs and comparative genomics
15:15 Wednesday 29 February FB/GK Lecture: HMMER and applications; course summary

Last Modified: 29 February 2012 by Graham Kemp