| Time | Date | Teacher | Topics |
|---|---|---|---|
| 13:15 | Monday 20 January | GK | Lecture: Introduction; Pairwise sequence alignment |
| 15:15 | Monday 20 January | GK | Lecture: Pairwise sequence alignment (should finish early) |
| 08:00 | Thursday 23 January | GK | Lecture: Perl (1) |
| 10:00 | Thursday 24 January | GK | Practical 1: Pairwise sequence alignment |
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| 08:00 | Thursday 30 January | GK | Lecture: Perl (2) |
| 10:00 | Thursday 30 January | GK | Practical 2: Perl (1) |
| 15:15 | Friday 31 January | MP | Lecture: Markov chains (local access only) |
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| 08:00 | Thursday 6 February | GK | Lecture: Perl (3) |
| 10:00 | Thursday 6 February | GK | Practical 3: Perl (2) |
| 13:15 | Thursday 6 February | TS | Lecture: Molecular phylogeny |
| 15:15 | Friday 7 February | MP | Lecture: Hidden Markov models (HMMs) (local access only) |
| 08:00 | Thursday 13 February | GK | Lecture: Sequence alignment |
| 10:00 | Thursday 13 February | GK | Practical 4: Perl (3) |
| 15:15 | Friday 14 February | MP | Lecture: Baum-Welch and Generalized HMMs (GHMMs) (local access only) |
| 15:15 | Wednesday 19 February | MDL/GK | Exome sequencing and analysis (slides updated, 2014-02-24) |
| 08:00 | Thursday 20 February | GK | Lecture: More on Perl and sequence alignment |
| 10:00 | Thursday 20 February | GK | Practical 5: Perl (4) |
| 15:15 | Friday 21 February | MP | Lecture: Pair HMMs (PHMMs), GPHMMs and comparative genomics |
| 08:00 | Thursday 27 February | FB | Lecture: HMMER and applications; large-scale DNA sequence analysis ; |
| 10:00 | Thursday 27 February | GK/MP | Practical 6: Pairwise alignment and Perl revision; HMM exercises |
| 10:00 | Thursday 6 March | GK/MP | Practical: Perl revision; HMM exercises |
| 08:30 | Monday 10 March | Exam | |