Lecture

HMMER and applications; large-scale DNA sequence analysis

Aims

• To demonstrate the application of bioinformatics analyis methods within a scientific project.

Supplementary Material

This lecture features work described in:

• Fredrik Boulund, Anna Johnning, Mariana Buongermino Pereira, DG Joakim Larsson and Erik Kristiansson (2012) A novel method to discover fluoroquinolone antibiotic resistance (qnr) genes in fragmented nucleotide sequences. BMC Genomics, 13, 695
  doi:10.1186/1471-2164-13-695

The lecture slides are available on-line:

• HMMER and applications
• Framework for gene quantification in large-scale metagenomics projects