Bioinformatics (2015/2016)
Practical 3
Check your solutions against the output given below.
Question 2
linux$ ./helices.pl PAPA_CARPA
CWAFSAVVTIEGIIKIRT
EQELLDC
PWSALQLVAQ
REK
EGALLYSIAN
KDFQ
VCG
linux$ ./helices.pl ACTN_ACTCH
WRSA
CWAFSAIATVEGINKIVT
EQELIDC
GCN
ITDGFQFIINN
LDLQN
EWALQTAVTY
DAFKH
TCG
Question 3
linux$ ./translate.pl
atgcatccctttaat
MetHisProPheAsn
tgcatccctttaat
CysIleProLeu
gcatccctttaat
AlaSerLeuTER
attaaagggatgcat
IleLysGlyMetHis
ttaaagggatgcat
LeuLysGlyCys
taaagggatgcat
TERArgAspAla
tctgtctga
SerValTER
ctgtctga
LeuSer
tgtctga
CysLeu
tcagacaga
SerAspArg
cagacaga
GlnThr
agacaga
ArgGln
Last Modified: 18 January 2016
by Graham Kemp