Bioinformatics (2015/2016)

Practical 3

Check your solutions against the output given below.

Question 2

linux$ ./helices.pl PAPA_CARPA
CWAFSAVVTIEGIIKIRT
EQELLDC
PWSALQLVAQ
REK
EGALLYSIAN
KDFQ
VCG
linux$ ./helices.pl ACTN_ACTCH
WRSA
CWAFSAIATVEGINKIVT
EQELIDC
GCN
ITDGFQFIINN
LDLQN
EWALQTAVTY
DAFKH
TCG

Question 3

linux$ ./translate.pl
atgcatccctttaat
MetHisProPheAsn

tgcatccctttaat
CysIleProLeu

gcatccctttaat
AlaSerLeuTER

attaaagggatgcat
IleLysGlyMetHis

ttaaagggatgcat
LeuLysGlyCys

taaagggatgcat
TERArgAspAla

tctgtctga
SerValTER

ctgtctga
LeuSer

tgtctga
CysLeu

tcagacaga
SerAspArg

cagacaga
GlnThr

agacaga
ArgGln

Last Modified: 18 January 2016 by Graham Kemp